SNP Profiles of BE 2 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
1._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
2._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
3._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
4._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
5._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
6._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
7._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
8._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
9._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
10._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
11._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
12._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
13._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
14._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
15._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
16._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
17._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
18._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
19._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
20._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
21._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
22._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
23._RUQ_1733	_	_	CG	_	_	_	TT	_	CT	_	AA	_	AG	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
1._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
2._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
3._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
4._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
5._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
6._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
7._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
8._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
9._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
10._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
11._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
12._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
13._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
14._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
15._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
16._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
17._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
18._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
19._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
20._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
21._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
22._BE_2	AA	GG	TT	CT	GG	GG	AA	TT	AA	CG	TT	CC	CC	AA
23._RUQ_1733	_	_	_	_	GG	GG	AA	_	AA	CG	_	_	AC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
1._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
2._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
3._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
4._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
5._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
6._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
7._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
8._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
9._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
10._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
11._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
12._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
13._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
14._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
15._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
16._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
17._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
18._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
19._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
20._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
21._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
22._BE_2	GG	AA	TT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
23._RUQ_1733	_	_	_	AA	_	_	_	_	CC	_	_	X_X	X_X	X_X

Input profile: BE_2

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 13

Dapeng Zhang, 2016

1._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 3

Dapeng Zhang, 2016

2._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

3._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

4._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

5._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

6._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

7._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 4

Dapeng Zhang, 2016

13._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 6

Dapeng Zhang, 2016

14._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 11

Dapeng Zhang, 2016

15._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 14

Dapeng Zhang, 2016

16._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302

Dapeng Zhang, 2016

17._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 12 > F

Dapeng Zhang, 2016

18._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 16 > F

Dapeng Zhang, 2016

19._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 8 > FP

Dapeng Zhang, 2016

20._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

21._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16 > FP4

22._BE_2

97.4 %
39 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

23._BE_2 RUQ_1733

92.3 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25